Posts Tagged scholarly publishing

Finding influential OATP news items

The Open Access Tracking Project (OATP) provides a unique resource. It distributes information about recent news items of interest from the perspective of the Open Access movement. Participants in the OATP tag new developments using Connotea. The OATP links include project feeds that contain all (and only) the items that participants have tagged with oa.new. One of the feeds is a Twitter feed, based on the version of the Connotea RSS feed showing the 50 most recent items.

Some influential news items are bookmarked in Connotea by more than one participant. One of the useful OATP mashups is a filtered version of the project feed, a “OATP 100 items no dups” feed of the 100 most recent news items, without duplicates.

Influential news items are also often found in multiple tweets, or have been retweeted, via Twitter. Another useful resource is Topsy, a “search engine powered by tweets“. Topsy provides way to assess the influence of news items that have been included in the OATP Twitter feed. One can simply use Topsy’s Advanced Search option to search within the Twitter user OATP. Such searches within the OATP Twitter feed can be restricted to the current day, or week, or month. The number of duplicate tweets (or retweets) about a news item can be used as a quantitative indicator of the influence of a particular news item. (It’s the URL of the news item that counts, not the exact text of the tweet). This indicator provides one kind of “article-level metric” (ALM) for that news item. (For an informative commentary about ALMs, see the OA article: Article-Level Metrics and the Evolution of Scientific Impact by Cameron Neylon and Shirley Wu, PLoS Biol 2009(Nov); 7(11): e1000242. [PubMed citation]).

An example of a very influential news item (well over 900 tweets, including the one from the OATP) during the week ending on July 24, 2010 was: BP buys up Gulf scientists for legal defense, roiling academic community | al.com. (See all of the Twitter trackbacks for this news item, via Topsy). The Connotea bookmark for this news item was tagged oa.industry, oa.new, oa.negative, oa.data by Peter Suber (Connotea user “petersuber“).

Comments:

Efforts to keep up with recent news items involve three major aspects. Firstly, there must be ways for the news items to be discovered. Secondly, ways are needed to filter the discovered items so that those of particular interest to an individual user can be identified easily. Thirdly, the discovered items of interest must be accessible to the reader.

About discovery: The Open Access movement may be unique, from a scholarly perspective, in the extent to which credible items of interest are distributed across the entire Web. A wide variety of online sources provide relevant items. The participants in the OATP (especially, Peter Suber) have been extraordinarily diligent in their efforts to discover such items. Additional news items can be identified via these tags: #openaccess and #oa. There is much overlap between these latter results, because both of these hashtags are often used together. I’ve not yet found an easy way to assess the extent of overlap between news items identified by the #openaccess or #oa hashtags and those included in the OATP feeds. There’s a feed that combines the OATP results with those for #openaccess, but duplicates between the two have not been eliminated.

About filtering: The tags added to Connotea bookmarks can be used to filter news items obtained via the Connotea site. An example is provided by the results of a search for oa.canada. Unfortunately, the Connotea search engine tends to function slowly, especially when combinations of tags are sought.  Searches via Topsy are more convenient, but Topsy does not recognize “oa.new” or “oa.canada” as hashtags, in the absence of a “#” symbol. My own experience so far has been that, thanks to the OATP, there’s less of a discovery deficit when seeking OA-related news items, and more of a filtration challenge. What are the most efficient ways to find those news items of greatest personal interest? They may not always be items that have a noteworthy number of Twitter trackbacks.

About access: there’s an advantage to the fact that credible news items of interest to the OA movement are widely distributed across the entire Web. Unlike articles in traditional toll-access academic journals, OA-related news items tend (not a surprise) to be publicly accessible, usually via Gratis OA. Perhaps the OA movement is in the process of providing an initial test of the conjecture that we are in the early stages of a growing movement to abandon traditional academic publishing? Or, perhaps more realistically, in the early stages of a growing movement to supplement traditional academic publishing with a variety of other approaches, all based on free and open services?

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UC versus NPG: First Round

UC threatens ‘systemwide boycott’ of Nature Publishing Group – June 09, 2010 by Daniel Cressey, The Great Beyond (a Nature blog), June 9, 2010. Excerpts:

The University of California is mulling a boycott of Nature Publishing Group in response to what it claims is a proposed 400% increase in subscription fees to the group’s journals, a letter from the university’s libraries reveals.

…..

Nature News has asked NPG for a response to the letter. It will be posted here as soon as we have it.

The letter is: Re: Informational Update on a Possible UC Systemwide Boycott of the Nature Publishing Group, California Digital Library, University of California, June 4, 2010.

More about the letter:

U. of California Tries Just Saying No to Rising Journal Costs by Jennifer Howard, Chronicle of Higher Education, June 8, 2010.

California throws the gauntlet in NPG’s face by Dorothea Salo, The Book of Trogool, June 8, 2010.

Possible Boycott of Nature Publishing Group Journals: an Open Letter from Gary Strong, University Librarian, to UCLA Faculty by Gary E Strong, Louise M Darling Biomedical Library Blog, June 8, 2010.

Some relevant FriendFeed entries, dated: [June 8][June 8[[June 9][June 9].

Comment: This is just Round One of what should be a very interesting fight negotiation. What will be the response by NPG to the letter from UC?

Added June 10, 2010: A response from NPG: Public statement from Nature Publishing Group regarding subscription renewals at California Digital Library (CDL), June 9, 2010. Found via: California libraries gearing up for fight against Nature (Updated) by John Timmer, Ars Technica, June 9, 2010.

Added June 12, 2010: Response to the public statement from NPG: Response from the University of California to the Public statement from Nature Publishing Group regarding subscription renewals at the California Digital Library, June 10, 2010. Found via: Nature Publishing Group Defends Its Price Increase for U. of California by Jennifer Howard, The Chronicle of Higher Education, June 9, 2010.

See also: Librarians at the gate over licensing rate by Paul Jump, Times Higher Education, June 11, 2010.

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OGI Genomics Publication Fund

The Genomics Publication Fund (GPF) of the Ontario Genomics Institute was launched on May 19, 2010. Examples of news items about the launch are available via: [PharmaLive][Connotea][BOAI Forum][FriendFeed][GenOmics][GHBN][Bio Saga]. The first paragraph of the OGI news release:

The Ontario Genomics Institute (OGI) has announced the launch of a new fund to support free and unrestricted access to scholarly research papers on genomics published in high impact journals. The OGI Genomics Publication Fund (GPF) will contribute up to $3,000 per publication to genomics researchers in Ontario wishing to make their papers available as Open Access from the earliest date of publication.

Excerpt from the Charter section of the GPF Charter & Guidelines [PDF]:

The Ontario Genomics Institute (OGI) aims to increase the profile, visibility, and citations of genomics research conducted in Ontario and published in top international journals.

At the end of part IV of the Guidelines section of the Charter & Guidelines is a list of recommend journals. The list of “Journals that are Immediately Open Access with no additional open access charge” includes Brit Med J and J Clin Invest, together with five PLoS journals (including PLoS ONE). Lists are also provided of ten “Journals that charge a fee to make an article Open Access” and over 80 “Journals that cannot be made open access unless with specific editorial approval“.

Comments:

I’ve had one meeting (and a few email exchanges) with OGI staff about the GPF, and am quoted (accurately) in the news release: “This fund is the first of its kind in targeting potential high impact publications”.

The GPF has a focus on Gold OA. However, OGI staff are aware of Green OA, and on page 2 (Step 4) of the Charter & Guidelines, it’s stated that: “Once the accepted manuscript is published the applicant must ensure that the publication is available via PubMed Central or an alternative open access repository …”.

The news release also includes a link to A Very Brief Introduction to Open Access. The author of this concise introduction, Peter Suber, pointed out that: “There are two primary vehicles for delivering OA to research articles: OA journals and OA archives or repositories.” Hybrid OA isn’t explicitly mentioned in this introduction. Perhaps this is because the number of publishers that offer a hybrid OA option has increased considerably since late December, 2004, when this brief version (of a much longer Open Access Overview) was first put online.

The focus on high impact journals limits the options available to those who intend to apply for funds from the GPF. One may ask: which journals are frequently selected for publications related to genomics or proteomics? A preliminary answer to this question can be obtained via PubMed PubReMiner (this resource was found via a comment posted by Brad Bixby to the ResearchGATE Science 2.0 & Publication 2.0 Group, May 14, 2010).

Search #1 used the query: “GENOMICS[TIAB] 2010/01/01:2010/05/01 [DP]” (without the quotes). The search was restricted to the time period between Jan. 1, 2010 and May 1, 2010 in order to limit the number of references assessed. The top ten journals identified (in 727 references) included only two that were on the GPF’s list of preferred journals – Proc Natl Acad Sci USA (#6) and PLoS ONE (#7). The journal ranked #1 was BMC Genomics (an OA journal with a 2008 Journal Impact Factor of 3.9).

Search #2 used the query: “PROTEOMICS[TIAB] 2010/01/01:2010/05/01 [DP]” (again, without the quotes, and for the same time period). The top ten journals identified (in 929 references) included only one that was on the GPF’s list of preferred journals: Mol Cell Proteomics (#3). The journal ranked #1 was Proteomics (a Wiley journal that has an “OnlineOpen” hybrid OA option and a 2008 Journal Impact Factor of 4.6).

These preliminary searches (and similar ones carried out to identify Informatics or Bioethics journals) clearly revealed the need for an assessment of applications to the GPF on a case-by-case basis. The OGI intends to do this. An excerpt from the Journals section at the end of the Charter & Guidelines [PDF]:

Manuscripts accepted in a journal listed below or with an ISI impact factor above 8 will be considered by OGI for funding via the GPF. For manuscripts accepted by other journals the applicant must justify in the application form why the publication is of sufficient impact to warrant support by the GPF.

Support from the GPF “will be given on a first come, first served basis” (see the news release). Will the GPF attract “up to 35 Open Access publications over the next 12 months“? If it does, then perhaps, as hoped by the OGI, “the launch of this fund will act as a catalyst for others to follow suit“.

More publication funds like the GPF would increase the pressure on publishers of high impact journals to provide OA options at prices that are acceptable to the agencies that sponsor such funds.

Although criticisms of the Journal Impact Factor (JIF) are well-known, it continues to be deeply embedded in the current academic culture. Perhaps, via publication funds like the GPF, the JIF can be utilized as a means to foster OA, rather than to inhibit it? Article-Level Metrics (ALMs) of the kind being developed by PLoS, also appear to have great potential as a means to foster OA.

However, publication funds designed to foster Gold OA should only be regarded as adjuncts to other approaches to the implementation of OA, not as replacements for them.

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Survey by Project SOAP

An email was received from BioMed Central today about Project SOAP. The message:

Your views on Open Access publishing are needed!

Dear Colleague,

BioMed Central has partnered with CERN, The Max Planck Society, and others in the European Commission-funded project SOAP – a Study of Open Access Publishing.

The project analyzes researchers’ attitudes towards, knowledge of and experiences with open access. The resulting insights as well as recommendations will be shared with the European Commission, publishers, research funding agencies, libraries and researchers.

Your contribution will be very valuable in shaping the public discourse on open access and we would be very grateful if you could take 10-15 minutes to complete this survey.

Please follow this link:
http://www.surveymonkey.com/s/soap_survey_c

Thank you in advance for your help,

BioMed Central

It happens that I had already completed the survey. It did require only about 10-15 minutes to complete. I found Question 23 especially interesting:

23. Listed below are a series of statements, both positive and negative, concerning Open Access publishing. Please indicate how strongly you agree/disagree with each statement.

[Responses are via a 5-level Likert item in typical format: 'Strongly agree'; 'Agree'; 'Neither agree nor disagree'; 'Disagree'; or 'Strongly disagree'].

Open Access publishing leads to an increase in the publication of poor quality research

[That OA scientific journals won't preserve the quality/pedigree of science is one of the  suggestions made by Eric Dezenhall to the Association of American Publishers - see Open Access to Science Under Attack by David Biello, Scientific American, January 26, 2007. For a recent response  to a suggestion of this kind, see: PLoS ONE: Editors, contents and goals, available via: http://ff.im/jPasa]

Open Access unfairly penalises research-intensive institutions with large publication output by making them pay high costs for publication

[This is an issue for Gold OA based on article-processing fees (APFs) - see, for example,  Science in the open, Nature Materials 2009; 8: 611. For some comments about this issue, see: More on the costs of scholarly communications, Peter Suber, May 22, 2008]

It is not beneficial for the general public to have access to published scientific and medical articles

[From a health-sciences perspective, this is a version of what BioMed Central has identified as (Mis)Leading Open Access Myth 4]

Publicly-funded research should be made available to be read and used without access barrier

[For a detailed analysis, see: The taxpayer argument for open access by Peter Suber, SPARC Open Access Newsletter, September 4, 2003]

Open Access publishing is more cost-effective than subscription-based publishing and so will benefit public investment in research

[For a summary of a pro-OA perspective on this issue, see: Major new report on the economic implications of OA, Peter Suber, Open Access News, January 27, 2009]

Articles that are available by Open Access are likely to be read and cited more often than those not Open Access

[This is actually two questions. The 'read more?' issue is currently less controversial than the 'cited more?' issue. For an extensive bibliography from The Open Citation Project, see: The effect of open access and downloads ('hits') on citation impact: a bibliography of studies]

If authors pay publication fees to make their articles Open Access, there will be less money available for research

[For a pro-OA response, see what BioMed Central has identified as (Mis)Leading Open Access Myth 1]

Researchers should retain the rights to their published work and allow it to be used by others

[See, for example: Retain copyright, in the Open Access section of the website of the University of Ottawa]

Open Access publishing undermines the system of peer review

[Another suggestion made by Eric Dezenhall was to "Paint a picture of what the world would look like without peer-reviewed articles" (quoted in Open Access to Science Under Attack by David Biello, Scientific American, January 26, 2007). See also:  Will open access undermine peer review?, Peter Suber, SPARC Open Access Newsletter, September 2, 2007]

Comment: A weakness of the SOAP Survey is that it appears to be feasible to respond to it more than once.

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Ten Years of PubMed Central

The blog post PubMed Central Turns Ten – Dr. David Lipman, by Dean Giustini (Open Medicine Blog, April 21, 2010), includes a link to
a video (51 min), entitled “Ten Years of PubMed Central “.

It’s a video of a talk given by David Lipman, Director of the National Center for Biotechnology Information at the National Library of Medicine, on March 23, 2010. He provides an overview of the past, present, and future of the National Institutes of Health’s archive of biomedical research articles, PubMed Central (PMC). Some noteworthy sections of the video are:

0 – 3:30 min: Introduction by Ian Lapp, Mailman School of Public Health (which cosponsored the event).

3:30 – 22:40 min: David Lipman describes the past of PMC.

22:40 – 31:30 min: He discusses the “Discovery Initiative”, an effort to “improve the quantity, quality and relevance of information obtained/viewed by users“. The value of weblog analyses is emphasized.

31:30 – 32:25 min: PMC statistics (as  of January 2010) are discussed.

32:25 – 38:50 min: Changes in written communication are considered.  Some very interesting comments are made about use of the Google knol authoring system to produce a new kind of journal, PLoS Currents: Influenza. Plans to produce other journals using this same authoring system are mentioned. These plans include additional PLoS Currents journals, but also journals initiated by other groups.

39:20 – 51 min: Discussion. The initial question is about the process for starting a Google knol journal.

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Can the costs of quality-filtration be reduced?

The costs of the conventional ‘hierarchy of journals’ approach to the quality-filtration of the research and scholarly literature can be very high.

For example, Mike Rossner, Executive Director of the Rockefeller University Press, has quoted a figure of US$10,000 as the average cost per article for the online versions of the three journals that this press publishes. These journals (and their 2008 Journal Impact Factors) are: J Cell Biol (9.1), J Exp Med (15.5) and J Gen Physiol (4.7). He provided this cost figure at the 07:50 min. point during his presentation at an event held on March 9, 2010 by the Scholarly Communication Program at Columbia University.

The full 97 min. video of the presentations is available at: Who Pays for Open Access?. Mike Rossner is the first of three speakers. He called these Rockefeller University Press journals ‘selective journals’, and described their business model, which provides free public access to articles after a 6-month embargo period. He suggested (at the 18:25 min. point in the video) that, for biomedical research journals, “charging for information in only the first 6 months after publication is a clear-cut way to know how valuable it is“.

The costs per article for these ‘selective journals’ are high mainly because of staffing costs of the ‘publication platform’. Tasks such as the management of the peer review system and the performance of copy-editing are done by paid staff. These people must deal with all of the manuscripts that are received, even though only about 10% of them are published.

Mike Rossner also suggested (at the 14:00 min. point in the video) that PLoS ONE provides an example of his definition of an ‘archival journal’ – one where: “Reviewers ask if data support conclusions, not whether the research represents an advance in the field “. An ‘archival journal’ publishes a higher proportion of submitted articles than does a ‘selective journal’. This higher volume reduces costs.

The current publication fee for PLoS ONE is US$1,350. This figure probably overstates the actual cost per article, if PLoS is indeed using PLoS ONE to subsidize its more selective journals (see the 14 min. point in the video, and, for example, Bulk Publishing Keeps PLoS Afloat, Philip Davis, The Scholarly Kitchen, July 7, 2008).

In contrast, Green OA costs much less. To date, an exemplar for Green OA is the arXiv repository, which provides OA to e-prints in Physics, Mathematics, Computer Science, Quantitative Biology, Quantitative Finance and Statistics. The cost of per submission for an article in the arXiv repository is much, much lower than the publication fee for PLos ONE. It’s less than US$7 per article (see the section on “How much does arXiv cost to operate? ” in the arXiv Support FAQ).

This much lower cost was mentioned (at the 48:35 min. point in the video) by Ivy Anderson, Director of Collection Development and Management at the California Digital Library, the second speaker in the event at Columbia University (whose presentation begins at the 18:50 min. point in the video). However, she also pointed out that arXiv is primarily a repository. It’s not a publishing platform.

Although submission to the arXiv doesn’t involve peer review, there is an arXiv moderation system. Excerpt:

The arXiv moderators are experts in their fields and in the types of submissions that are appropriate for their subject classifications. They evaluate based on the content of the submission and the policies of arXiv.

In an analogous way, the OA collection PLoS Currents: Influenza also uses a Board of Expert Moderators. In the PLoS Currents FAQs, it’s stated (here) that:

There are currently no publication charges for PLoS Currents. However, it is possible that we will introduce a small publication charge in future to cover the running costs.

It’s also stated, near the bottom of the same FAQs page, that: “We intend PLoS Currents: Influenza to be the prototype for additional PLoS Currents sites“.

Comments: The entire video (Who Pays For Open Access?) is recommended, including the presentation by the third speaker (Bettina Goerner, Manager, Open Access for Springer, beginning at 51:40 min. in the video) and the discussion session (beginning at 72:25 min.).

So, how best to increase the cost-effectiveness of quality-filtration of the research and scholarly literature? One can ask (as does Mike Rossner at the 17:40 min. point in the video): “Has the revolution in searchability negated the utility of selective journals as filters of information?“. He thinks that it hasn’t (and won’t for some time).

Perhaps, if PLoS Currents: Influenza is successful, in that it’s valued by it’s users and it’s running costs are low, then this peer moderation-based approach to quality-filtration of contributions to specified areas of research may flourish, as it has for those specified areas served by the arXiv.

It’s noteworthy that some basic article-level metrics (ALMs) are also provided for each contribution to PLoS Currents: Influenza. These include statistics about “Views” and “Comments“, together with “Ratings“. One need not wait for citation data in order to obtain some guidance about those contributions to this collection that are already attracting attention.

For more about the need for sophisticated ALMs, see: Article-Level Metrics and the Evolution of Scientific Impact by Cameron Neylon and Shirley Wu, PLoS Biol 2009(Nov); 7(11): e1000242. See also the “Metrics” and “Comments” that are attached to this same article.

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Video on importance of OA for research from Kenya

Prof. Mary Abukutsa-Onyango discusses the importance of Open Access for research from Kenya and other African countries, Leslie Chan, Bioline News Blog, March 27, 2009. Video (08:45 min) posted March 27, 2010 on Vimeo and March 20, 2010 on YouTube. See also [FriendFeed entry].

About this video:

In an interview conducted by Leslie Chan of Bioline International, Prof. Mary Abukutsa-Onyango of Jomo Kenyatta University of Agriculture and Technology discussed the challenges she faced when trying to publish her original research on African Indigenous Vegetables (AIV) in “international” journals, and the importance of Open Access journals in Africa in ensuring that important research relevant to the continent are being published, read, and applied. The implications of Open Access for development in African countries were also discussed. The interview was recorded on Feb. 19th, 2010 at the University of Nairobi during a Workshop on Increasing the Impact of Research through Open Access, co-hosted by the University of Nairobi Library, eIFL.Net and Bioline International. www.bioline.org.br

For an example of an article by Mary Abukutsa-Onyango in the African Journal of Food, Agriculture, Nutrition and Development (AJFAND), see: The role of home gardening in household food security in Butere division of Western Kenya, Musotsi, AA; Sigot, AJ & Onyango, MOA, AJFAND 2008; 8(4): 375-90. Abstract:

Gardening remains the most important method of food production for a majority of people in the developing world, yet high population density has put a lot of pressure on land as more of it is required for settlement. This has led to land fragmentation, which has negatively affected food production, hence, resulted in food insecurity. Food insecurity is a concern today in many parts of Kenya. Land use practices thus have to be intensified to maximize food production on the small land available. Home gardening has been identified as a means of providing all year round access to food for rural households. Home gardens can make a significant contribution in meeting daily household needs for better nutrition and health. A study was carried out among rural households in Butere division, western Kenya, to determine the role of home gardening on household food security. Simple random sampling was used to obtain a study population of 100 households, to whom an interview schedule and an observation checklist was administered. Twenty key informants were purposively sampled and responded to questionnaires. Data obtained were analyzed quantitatively. Pearson correlation coefficient was applied on home gardening indicators: size of land for home gardening, home garden crops and home garden livestock, and food security indicators: food stock and number of meals eaten daily by households. Results obtained showed that home gardening plays a significant role in food security of rural households with respect to size of land and food stock (0.336 at p≤0.01), and number of livestock and food stock (0.211 at p≤0.05). Home gardening did not play a significant role in food security with regard to home garden crops. Households, therefore, should be empowered and encouraged to improve their practice of home gardening to realize food security. Findings of this study will be useful to governmental and non-governmental bodies involved in promoting food security in the rural households.

See also the Bioline International entry for AJFND and the home page for AJFND Online.

Comment: One of Prof. Abukutsa-Onyango’s noteworthy comments about “the challenges she faced when trying to publish her original research on African Indigenous Vegetables (AIV) in ‘international’ journals” was that the AIVs were dismissed by some people as ‘weeds’. See the article KENYA: No longer a weed, IRIN Africa, August 7, 2009.

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Acceptance of technological changes

If Open Access to electronic versions of the peer reviewed literature is regarded as a technological change (or, an ‘invention’, in comparison with toll access), then what factors might be expected to influence the acceptance of such ‘inventions’ within a society? On the basis of his examination of the literature on technological change, Jared Diamond identified four main factors. (See Chapter 13 of “Guns, Germs and Steel: The Fates of Human Societies“, W W Norton, 2005 edition).

The four factors: 1) Relative economic advantage compared with existing technology; 2) Social value and prestige (which can override economic benefit, or lack thereof); 3) Compatibility with vested interests; 4) Ease with which the advantages of the invention can be observed.

The primary producers of the peer reviewed literature (researchers and scholars) may differ in their perspectives, about a least some of these factors, from the perspectives of the institutions that support their work (such as universities, research institutes and funding agencies).

From the perspective of individual researchers and scholars, there’s no obvious economic advantage to themselves that can be attributed to OA. For example, any extra time (or funds) required to achieve Green (or Gold) OA could instead be devoted to research or scholarship.

If OA yields economic advantages, they are likely to be achieved at levels beyond that of the individual researcher, e.g. by leading to a much more efficient and effective system for the dissemination of research outputs. The institutions that support individual investigators are much more likely to be concerned about such economic advantages than are individual researchers or scholars.

From the perspective of individual researchers and scholars, social value and prestige are linked to the indicators currently used (e.g. by promotions committees at universities and research institutes) to assess research or scholarly productivity. The journal Impact Factor (IF) continues to be the main quantitative indicator that’s used for this purpose (in spite of it’s well-known defects when used to assess the productivity of individuals, and especially, when used to compare the research outputs of individuals who have contributed to different research areas). Long-established, high-IF traditional toll-access journals have an advantage over more recently-initiated Gold OA journals. The Green Route to OA (via OA repositories) is permitted by many of these high-IF traditional toll-access journals. However, compromises must often be accepted, such as an embargo period between the date of publication and the date of OA, and/or access only to the final post-peer review postprint, rather than to the ‘version of record’.

Compatibility with vested interests is obviously an important factor. As noted above, the use of quantitative indicators (especially IFs) to assess research or scholarly productivity is deeply embedded into the policies and procedures of promotions committees at universities and research institutes, and into those of peer review committees at funding agencies.  As a consequence, whatever their personal views about how best to assess research productivity, individuals supported by these institutions must take this vested interest in such indicators into account when they consider routes of publication.

Of course, the publishers of traditional toll-access journals have an even stronger vested interest in maintaining (as much as possible) a system that they have dominated, and from which they’ve benefited, both economically and socially.

Finally, again from the perspective of individual researchers and scholars, the advantages of OA may not be easy to observe. The extent to which OA provides a citation advantage continues to be controversial, and probably varies across different research areas. The likelihood that OA increases and broadens attention to research outputs is less controversial. However, appropriate indicators (such as ‘Article-Level Metrics’, designed to provide credible multidimensional quantitative measures of the impact of individual publications) are still at an early stage of development.

Institutions that support research and scholarship may be more interested in the uses that are made of the new knowledge produced by the individuals that they have supported than are those individuals themselves. This question is asked: Has this new knowledge led to useful practical applications, of the kind that may serve to provide evidence that the public investment in the supporting institutions has yielded identifiable social or economic benefits?

If these four factors are indeed applicable to the acceptance of OA, then it’s not surprising that OA hasn’t yet become the dominant route to the quality-filtered research and scholarly literature.

How best to foster changes in the ways in which these four factors influence the acceptance of OA? So far, institutions that provide support for research (and especially, funding agencies) appear to be playing leadership roles in fostering appropriate changes. Acceptance of OA does appear to be increasing, although slowly.

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Guidance re data sharing and patient privacy

New guidance on data sharing will minimize risks to patient privacy, EurekAlert, January 28, 2010.

And: BMJ policy on data sharing, Trish Groves, BMJ 2010(Jan 28); 340: c564 (Editorial; only the first 150 words are publicly accessible).

See also: How to publish raw clinical data: guidelines from Trials and the BMJ, Matthew Cockerill, BioMed Central Blog, January 29, 2010.

About this article: Preparing raw clinical data for publication: guidance for journal editors, authors, and peer reviewers by Iain Hrynaszkiewicz, Melissa L Norton, Andrew J Vickers, Douglas G Altman, Trials 2010(Jan 29); 11(1): 9 [Epub ahead of print][Connotea bookmark][PubMedCitation].

This article has been co-published: BMJ 2010(Jan 28); 340: c181 [PubMed Citation]. Summary points:

Despite journal and funder policies requiring data sharing, there has been little practical guidance on how data should be shared

Confidentiality and anonymity are key considerations when publishing or sharing data relating to individuals, and this article provides practical advice on data sharing while minimising risks to patient privacy

Consent for publication of appropriately anonymised raw data should ideally be sought from participants in clinical research

Direct identifiers such as patients’ names should be removed from datasets; datasets that contain three or more indirect identifiers, such as age or sex, should be reviewed by an independent researcher or ethics committee before being submitted for publication

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Contribution to the OSTP Policy Forum

Today (December 20) is the last day for contributions to the first phase of the Public Access Forum, sponsored by the White House Office of Science and Technology Policy (OSTP): Policy Forum on Public Access to Federally Funded Research: Implementation.

The next phase, to begin on Dec. 21, is described at: Public Access Policy Phase One Wrap-Up: Implementation. Phase Two of this forum will focus on “Features and Technology”. It’s scheduled to run from Dec. 21 to Dec. 31. Phase Three, focused on “Management”, is expected to run from Jan. 1 to Jan. 7. (Initially, this Policy Forum was scheduled to end on Jan. 7, but the timeline has been extended by two weeks. The current plan is to “use those last two weeks to revisit, on a more detailed level, all three focus areas that will have been addressed by then“).

My own contribution to the first phase, posted today, was:

Thanks for the opportunity to post a comment. OSTP has provided innovative leadership in it’s initiation of this Policy Forum.

Who should enact public access policies?:
• Agencies that fund a significant amount of research should enact mandatory policies. Some differences in policies across agencies may be necessary at this time, but researchers (and their institutions) should not be overburdened by too many differing implementation requirements.

Version and Timing:
• The author’s final version, after peer review, of papers stemming from all publicly-funded research should be required to be deposited into an open, central repository immediately upon acceptance for publication. The author(s) should retain copyright to this version.

Mandatory:
• Deposit should be mandatory, by funders and also by each sponsoring institution. Persistent failure by authors to comply with such a policy should lead to appropriate penalties (such as ineligibility for further funding).
• Deposit should be in a central repository. There are already two successful central repositories, arXiv and PMC. (What’s missing is a successful one for all of the social sciences and humanities). Harvesting from the central repository into the sponsoring institution’s repository should be feasible, if desired by the sponsoring institution (to reduce the burden on researchers and their sponsoring institutions).

Other:
• From an international perspective, there should be harmonization of policies by those agencies in different countries that support similar kinds of research. For example, the requirements for deposition in PMC, UKPMC and PMC Canada should not differ.
• The value-added services offered by these repositories could differ. For example, an ideal value-added service would be the provision, for each article in a repository, of credible article-level metrics (ALMs). The Public Library of Science (PLoS) has already done pioneering developmental work on such ALMs (http://www.plos.org/cms/node/485). The repositories of sponsoring institutions could also provide value-added services not already available via the central repositories.

Comment: These comments are, of course, my own. They do not represent the views of any of the institutions or organizations with which I’m associated.

The only aspect of my comments that’s at all novel is probably the suggestion that deposition in both central repositories and the repositories of sponsoring institutions would permit each type of repository to offer different value-added services to authors and users. My current view is that such value-added services are needed to establish (or enhance) differences in “brand” across different repositories, and to increase the appeal of repositories to authors and users.

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