Posts Tagged Gold OA

OGI Genomics Publication Fund

The Genomics Publication Fund (GPF) of the Ontario Genomics Institute was launched on May 19, 2010. Examples of news items about the launch are available via: [PharmaLive][Connotea][BOAI Forum][FriendFeed][GenOmics][GHBN][Bio Saga]. The first paragraph of the OGI news release:

The Ontario Genomics Institute (OGI) has announced the launch of a new fund to support free and unrestricted access to scholarly research papers on genomics published in high impact journals. The OGI Genomics Publication Fund (GPF) will contribute up to $3,000 per publication to genomics researchers in Ontario wishing to make their papers available as Open Access from the earliest date of publication.

Excerpt from the Charter section of the GPF Charter & Guidelines [PDF]:

The Ontario Genomics Institute (OGI) aims to increase the profile, visibility, and citations of genomics research conducted in Ontario and published in top international journals.

At the end of part IV of the Guidelines section of the Charter & Guidelines is a list of recommend journals. The list of “Journals that are Immediately Open Access with no additional open access charge” includes Brit Med J and J Clin Invest, together with five PLoS journals (including PLoS ONE). Lists are also provided of ten “Journals that charge a fee to make an article Open Access” and over 80 “Journals that cannot be made open access unless with specific editorial approval“.

Comments:

I’ve had one meeting (and a few email exchanges) with OGI staff about the GPF, and am quoted (accurately) in the news release: “This fund is the first of its kind in targeting potential high impact publications”.

The GPF has a focus on Gold OA. However, OGI staff are aware of Green OA, and on page 2 (Step 4) of the Charter & Guidelines, it’s stated that: “Once the accepted manuscript is published the applicant must ensure that the publication is available via PubMed Central or an alternative open access repository …”.

The news release also includes a link to A Very Brief Introduction to Open Access. The author of this concise introduction, Peter Suber, pointed out that: “There are two primary vehicles for delivering OA to research articles: OA journals and OA archives or repositories.” Hybrid OA isn’t explicitly mentioned in this introduction. Perhaps this is because the number of publishers that offer a hybrid OA option has increased considerably since late December, 2004, when this brief version (of a much longer Open Access Overview) was first put online.

The focus on high impact journals limits the options available to those who intend to apply for funds from the GPF. One may ask: which journals are frequently selected for publications related to genomics or proteomics? A preliminary answer to this question can be obtained via PubMed PubReMiner (this resource was found via a comment posted by Brad Bixby to the ResearchGATE Science 2.0 & Publication 2.0 Group, May 14, 2010).

Search #1 used the query: “GENOMICS[TIAB] 2010/01/01:2010/05/01 [DP]” (without the quotes). The search was restricted to the time period between Jan. 1, 2010 and May 1, 2010 in order to limit the number of references assessed. The top ten journals identified (in 727 references) included only two that were on the GPF’s list of preferred journals – Proc Natl Acad Sci USA (#6) and PLoS ONE (#7). The journal ranked #1 was BMC Genomics (an OA journal with a 2008 Journal Impact Factor of 3.9).

Search #2 used the query: “PROTEOMICS[TIAB] 2010/01/01:2010/05/01 [DP]” (again, without the quotes, and for the same time period). The top ten journals identified (in 929 references) included only one that was on the GPF’s list of preferred journals: Mol Cell Proteomics (#3). The journal ranked #1 was Proteomics (a Wiley journal that has an “OnlineOpen” hybrid OA option and a 2008 Journal Impact Factor of 4.6).

These preliminary searches (and similar ones carried out to identify Informatics or Bioethics journals) clearly revealed the need for an assessment of applications to the GPF on a case-by-case basis. The OGI intends to do this. An excerpt from the Journals section at the end of the Charter & Guidelines [PDF]:

Manuscripts accepted in a journal listed below or with an ISI impact factor above 8 will be considered by OGI for funding via the GPF. For manuscripts accepted by other journals the applicant must justify in the application form why the publication is of sufficient impact to warrant support by the GPF.

Support from the GPF “will be given on a first come, first served basis” (see the news release). Will the GPF attract “up to 35 Open Access publications over the next 12 months“? If it does, then perhaps, as hoped by the OGI, “the launch of this fund will act as a catalyst for others to follow suit“.

More publication funds like the GPF would increase the pressure on publishers of high impact journals to provide OA options at prices that are acceptable to the agencies that sponsor such funds.

Although criticisms of the Journal Impact Factor (JIF) are well-known, it continues to be deeply embedded in the current academic culture. Perhaps, via publication funds like the GPF, the JIF can be utilized as a means to foster OA, rather than to inhibit it? Article-Level Metrics (ALMs) of the kind being developed by PLoS, also appear to have great potential as a means to foster OA.

However, publication funds designed to foster Gold OA should only be regarded as adjuncts to other approaches to the implementation of OA, not as replacements for them.

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What’s the future of OA?

Tom Wilson, in a message sent to the BOAI Forum on October 31, 2009, suggested that “… any strategy [for the OA movement] evolved today on the assumption that the future is likely to be the same as the past is probably going to fail“. Other excerpts:

No one knows exactly how the ‘open access’ movement will pan out ….. Strong advocacy of repositories is strong advocacy of the status quo in scholarly communication. ….. scholars are increasingly taking matters into their own hands and producing free OA journals on some kind of subsidy basis and any economist will tell you that social benefit is maximised by this form of OA.

Stevan Harnad, in a response to the same Forum, has reiterated some of his well-known perspectives:

The purpose of the Open Access movement is not to knock down the publishing industry. The purpose is to provide Open Access to refereed research articles. ….. The way to take matters in their [scholars'] own hands is to deposit the refereed final drafts of all their journal articles in their university’s OA Repository.

Comment: My own opinion is that both perspectives are tenable. I agree with Stevan Harnad that the most important short-term goal of the OA movement is to “provide Open Access to refereed research articles“. I also agree with Tom Wilson that ”No one knows exactly how the ‘open access’ movement will pan out” over the longer term, and that “the status quo in scholarly communication” seems likely to be unstable.

However, if the “status quo” is identified as a somewhat bewildering variety of options for scholarly communication that are changing quickly as technologies evolve, and are varying from field to field (and even across sub-disciplines in the same field), then this “status quo” may persist for quite a few years, before a smaller number of “best practices” become firmly established.

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Addressing the scandal of the knowledge divide

An essay by Jean-Claude Guédon, Open Access and the divide between “mainstream” and “peripheral” science, was posted recently (July 23, 2009) at Mesa Redonda sobre Patrimonio Intelectual y Conocimiento Libre. [Apparently, this is a website supported by the Government of Venezuela - Google translation from Spanish to English: "Roundtable on Intellectual Heritage and Free Knowledge"]. A short excerpt from the latter part of this interesting essay:

This paper identifies the facets of the Gold and Green Roads that make sense in addressing the scandal of the knowledge divide. It brings to light essentially two fundamental strategies: on the Gold side, fully subsidized journals that do not financially penalize authors from poor countries, or do not submit them to humiliating forms of pleading for special treatment are essential. On the Green side of Open Access, the way to create symbolic value in competition with what presently supports the divide barriers is to organize a coherent system of institutional and thematic repositories. The former are charged with collecting and preserving all that they can and want to preserve. It is through institutional repositories that depositing mandates should be implemented as mandates can originate from a variety of institutions with some political clout, universities, research centres and granting agencies among them. However, it is through thematic repositories that the (research) wheat can be separated from the chaff and it is through them that various forms of new and useful forms of symbolic value can be created.

This essay had been deposited previously, as an eprint of a book chapter, in the E-LIS repository. The eprint was last modified on November 19, 2008. The citation indicates that this book chapter was expected to be “forthcoming in 2007, in Portuguese“.

Blog items (apparently, about an earlier version of the eprint) were posted by Peter Suber (OA for mainstreaming peripheral science) on December 1, 2007 and by Heather Morrison (National open access journal subsidy) on December 1, 2007. The eprint has been cited on CiteULike, and a version is also available via Scribd, posted on August 18, 2008 (see: http://bit.ly/coRCx).

The version posted at the Venezuelan site has generated some recent interest on FriendFeed. See, for example, http://ff.im/5If9y (July 25, by Bill Hooker) and http://ff.im/5NDNw (July 27, by Bora Zivkovic). Recommendation from Bora Zivkovic: “[Essay] by Jean-Claude Guédon is a Must Read of the day“.

Comment: An excerpt from Heather Morrison’s blog post is noteworthy:

Scielo is an excellent example of what can be accomplished through a nationally subsidized open access program. While the Scielo portal encompasses the scholarly work of many latin countries, Brazil alone, in 2005, brought 160 fully open access journals to the world at a very modest cost of only $1 million dollars.

Canada is experimenting with subsidized open access journals, through the Aid to Open Access Journals program.

Note: The link to the webpage for SSHRC’s Aid to Open Access Journals program has been updated in the excerpt. This  program has been renamed the SSHRC Aid to Scholarly Journals program. See also: About SSHC > Policy Focus > Open Access.

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New OA Journal for single cell analysis

A new peer-reviewed OA journal, oap:single cell analysis, is intended “for papers pertaining to technology, application and research approaches for the biomolecular analysis of cells at a single cell level“.

On the Editorial Policy page, it’s  stated that authors retain copyright. On the Article Processing Charges page, the APCs for research articles and review articles are £499. There are no APCs for Editorials, Letters to the Editor, or Errata.

This is the first title to be produced by openaccesspublications.com, a new site from Technology Networks Ltd. This online publisher also publishes several science portals, including StemCells.net.

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Update on OA journals from Academic Journals

On January 23 2009, there was a post, Many new and forthcoming OA journals from Academic Journals, by Gavin Baker, on Open Access News. A list of OA journals was included in the post, organized by launch date. Today, I visited the website of Academic Journals and reviewed their List of  Journals. At the end of the “Instructions for Authors” section of each journal, the current handling fee (article processing fee) for that journal can be found.

Below is a revised list of 54 journals, again organized by launch date.  For those journals with existing issues, the current handing fee has been added.

First online issue before 2009 (with date of first online issue):

* African Journal of Biotechnology (Nov 2002): $650
* Biotechnology and Molecular Biology Reviews (Apr 2006): $550
* Educational Research and Reviews (Apr 2006): $450
* African Journal of Agricultural Research (Aug 2006): $600
* International Journal of Physical Sciences (Sep 2006): $550
* International NGO Journal (Oct 2006): $300
* Scientific Research and Essays (Oct 2006): $550
* African Journal of Business Management (Feb 2007): $550
* African Journal of Microbiology Research (May 2007): $550
* African Journal of Political Science and International Relations (May 2007): $550
* African Journal of Biochemistry Research (June 2007): $550
* African Journal of Environmental Science and Technology (Aug 2007): $550
* Journal of Cell and Animal Biology (Aug 2007): $550
* Journal of  Medicinal Plants Research (Aug 2007): $600
* African Journal of Food Science (Sep 2007): $550
* African Journal of Plant Science (Sep 2007): $550
* African Journal of Pure and Applied Chemistry (Sep 2007): $550
* African Journal of Pharmacy and Pharmacology (Dec 2007): $600
* Journal of Geography and Regional Planing (Mar 2008): $550
* African Journal of Mathematics and Computer Science Research (Aug 2008): $550

First issue in January 2009:

* International Journal of Medicine and Medical Sciences: $750

First issue in March 2009:

* Journal of Plant Breeding and Crop Science: $550
* Journal of Psychology and Counseling: $550

Planned for March 2009:

* International Journal of Genetics and Molecular Biology
* Journal of Engineering and Technology Research
* Journal of Geology and Mining Research

Planned for April 2009:

* African Journal of History and Culture
* International Journal of Nursing and Midwifery
* International Journal of Vocational and Technical Education
* Journal of Accounting and Taxation
* Journal of Bacteriology Research
* Journal of Bioinformatics and Sequence Analysis
* Journal of Dentistry and Oral Hygiene
* Journal of Development and Agricultural Economics
* Journal of Ecology and The Natural Environment
* Journal of Economics and International Finance
* Journal of Educational Administration and Policy Studies
* Journal of Entomology and Nematology
* Journal of General and Molecular Virology
* Journal of Law and Conflict Resolution
* Philosophical Papers and Review

Planned for May 2009:

* African Journal of Marketing
* International Journal of Biodiversity and Conservation
* International Journal of Fisheries and Aquaculture
* International Journal of Library and Information Science
* International Journal of Livestock Production
* International Journal of Sociology and Anthropology
* Journal of Horticulture and Forestry
* Journal of Media and Communication Studies
* Journal of Parasitology and Vector Biology
* Journal of Pharmacognosy and Phytotherapy
* Journal of Public Administration and Policy Research
* Journal of Toxicology and Environmental Health Sciences
* Journal of Veterinary Medicine and Animal Health

[List modified on March 16 and 17, 2009]

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Harold Varmus interviewed

Dr Varmus, I presume? By David Worlock, Outsell’s Thinking Out Loud, October 15, 2008. Excerpts:

October 14 was the foundation date for PLoS Biology, as well as the designated Open Access Day, so the 300 STM publishers gathered at the STM Association’s annual meeting on that day at the Frankfurt Book Fair to hear this interview needed no reminder of the significance of Dr Varmus’ work. They may have been surprised, however, when he spoke as a publisher himself and shared some of his five years of experience.

…..

The foundation of PLoS One as a fast track publication mode based on review of technical competence and eligibility, rather than scientific standing or originality, had been a great success, with a high proportion of submissions being accepted at a lower $1200 fee. The peer reviewed journals now had high reputations, and rejected some 90% of submissions, but had needed to raise fees beyond his forecast of five years ago to cover costs.

…..

He is plainly interested by search tools and analysis, and while it remains his conviction that repositories like PubMed are a critical component, he wants to see the urge of scientists to cross search the literature on factors and issues of their own choosing as vital to eventual success, regardless of the conventional structures of current article publishing.

…..

And in terms of new developments, he certainly sees the article as a work in progress, and was particularly strong on the need, where privacy and data regulation permitted, for more of the evidential base to be exposed to allow other scientists to examine the data from which conclusions had been drawn, and subject it to their own analytical techniques.

Recommendation: Read the entire text of the blog post from which these excerpts were taken.

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